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Is there a way to specify alleles e.g. (C;C) or (T;C) after an RSID in the cohort browser?
- Former User of DNAx Community_58
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end_to_end_gwas_phewas/gwas-phenotype-samples-qc.ipynb
- Permanently deleted user
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I am running an anlysis in jupiter notebook and having issues
- Former User of DNAx Community_6
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Hesin ICD10 digit availability
- Permanently deleted user
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Are the X-chromosome heterozygosity scores available?
- Former User of DNAx Community_21
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Is there a way to determine which instance should be used for a particular application?
- Permanently deleted user
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file paths in WDL json files.
- Former User of DNAx Community_62
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How to overwrite preexisting file with the same name and path when using dx upload?
- Former User of DNAx Community_55
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Virtual Meetup April 20th: Large-Scale Genomics Research with the UK Biobank Platform Credits Programme
- Brenton Pyle
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I want to perform a GWAS using phenotype and genotype data on unrelated individuals (regression). How to add phenotype, genotype, and covariates data for unrelated individuals either in Jupyter lab or Rstudio on RAP to perform my analysis.
- Former User of DNAx Community_34
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How can I merge the phenotypic genetic data ( DataFrame and MatrixTable)?
- Permanently deleted user
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dxfuse mounted filesystem eventually fails with "transport endpoint is not connected"
- Former User of DNAx Community_55
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Using returned accelerometer data on UKB RAP
- Former User of DNAx Community_86
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Cohort Selection and Genomic & Phenotype Data Extraction - Machine Learning 1: Coffee Break".
- Permanently deleted user
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Specify a normal filename / filepath for input JSON using WDL
- Former User of DNAx Community_55
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Using cohort browser, adding columns for 300 fields for a list of participant is going to be very tedious task. I have the field ids of those 300 fields. Is there a way to add those fields through scripts or through SQL database query?
- Former User of DNAx Community_85
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Extraneous jobs for input and output when running WDL workflows?
- Former User of DNAx Community_55
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Hello, I have a question regarding saige
- Former User of DNAx Community_6
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Is there more detailed information about WGS and WES. For example, BGI WGS CRAM files, Whole genome CRAM files. What specific data are contained in these folders. Thanks!
- Former User of DNAx Community_59
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In cohort browser plots for 2 chosen cohorts are overlapping in tiles - is there any way to force them side-by-side, as it was in the video tutorials?
- Former User of DNAx Community_40
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Uploading many small files very slow: Hi all, I'm trying to extract zipped images and re-upload them to the platform. Although small (each slice is around 250kB), the upload times are prohibitively slow. What is your approach?
- Former User of DNAx Community_64
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Selecting SNPs of Interest and Linking These (Selected SNPs) to Rest of Data
- Former User of DNAx Community_83
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dxfuse: automatically mount /mnt/project on custom Docker images?
- Former User of DNAx Community_55
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How does dxfuse work in MacOS?
- Permanently deleted user
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How can I verify that a WDL workflow previously compiled with dxCompiler was compiled with the -streamFiles flag?
- Former User of DNAx Community_98
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May I ask how I should find the specific genetic data I need in WGS and WES compressed data, since it is impossible to open and check, such as regarding Prostate cancer and Thyroid cancer, do I need to apply the tools . Whether there are relevant codes.
- Former User of DNAx Community_59
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Query of the week #4: Working with JSON and jq to get more details about your cohort(s)
- Ondrej Klempir
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Webinar Apr 13: Flexible Variant Annotation on the UK Biobank Research Analysis Platform
- Brenton Pyle
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I'm wondering if it's possible to understand dates of recurrent diseases in Summary Diagnoses of UKB. For example, an individual was diagnosed with lung cancer in 2010. and again diagnosed with lung cancer (same ICD code) in 2017.
- Former User of DNAx Community_19
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Hello, I am using RStudio workbench. I am doing a task that takes quite long time. I get an error message and my session ends even though I am in Rstudio. Is there anyway to extend active session in RStudio? Thanks.
- Former User of DNAx Community_71
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