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What are the tools that can be used in the UKB RAP for variant annotation?
- Permanently deleted user
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[Transferring genotype data to an EuroHPC facility] I am wondering if it is feasible to use high-performance computing clusters in Europe, such as LUMI, to analyze the UK Biobank data.
- Former User of DNAx Community_3
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Can one run a PBS job script using qsub in UKB RAP? Can it be done in ttyd?
- Former User of DNAx Community_34
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How to do code separation when building python applet
- Former User of DNAx Community_92
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I am trying to download proteomics data in ukbiobank rap. I could able to extract the variable that was noted in the release email. I dont see any values in the file. I tried downloading through data portal but I am not sure if its downloading or not.
- Former User of DNAx Community_6
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can I use BOLT LMM for my job and how to use it
- Former User of DNAx Community_31
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Haplotype/LD analysis using TOPMed impute data
- Former User of DNAx Community_67
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New Data Release on UKB-RAP: Olink Proteomics Data
- Brenton Pyle
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Working on processing incident events, need help.
- Former User of DNAx Community_6
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Webinar June 1: Analyzing the UK Biobank Proteomics Data on the UK Biobank Research Analysis Platform
- Brenton Pyle
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Latest data refresh deleted previous cohort datasets and breaks custom dashboards
- Former User of DNAx Community_55
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Is there a field for AAscore from GraphTyper?
- Permanently deleted user
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I'm trying to use "dx upload filename --destination "project/path" from my university network but I'm getting errors like: urllib3.exceptions.ProtocolError: ('Connection aborted.', TimeoutError('The write operation timed out')) Is there an outage?
- Former User of DNAx Community_55
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Hi, my UK B data on the RAP has been on refreshing for the past two weeks. I was told that an additional variable I requested has been added but I cannot access it due to refreshing showing 0%. what do I do?
- Former User of DNAx Community_84
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Using VEP with docker, mount a cache located in my UKB project
- Former User of DNAx Community_68
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Hi there, I'm trying to build a python applet and would like to use multiprocessing module to go faster with the 96 core instance option. Is there a code snippet I can steal for this? I tried the basic one with multiprocessing.pool, but got no luck.
- Former User of DNAx Community_92
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Has the image_file argument been removed from dx run?
- Former User of DNAx Community_68
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How to run the R script faster on UKB RAP?
- Former User of DNAx Community_34
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Swiss Army Knife not generating outputs (merged .bed file)?
- Former User of DNAx Community_42
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WDL instance type definition
- Permanently deleted user
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How to use more than 100 machines simultaneously
- Former User of DNAx Community_55
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Anyone else seeing Py4JJavaError today when using toPandas()?
- Former User of DNAx Community_12
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How to get skato to work with Regenie?
- Former User of DNAx Community_21
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How to use parabricks mutect2 caller on multiple .cram files?
- Former User of DNAx Community_25
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Query of the week #7: About linking geno and pheno data
- Ondrej Klempir
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When connecting to a job via SSH, is there any way to manually send a "Done" signal instead of terminating it with dx terminate ?
- Former User of DNAx Community_48
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Has anyone used locus zoom in DNAnexus before?
- Former User of DNAx Community_6
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