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How to Access OMOP database of ukbiobank?
- Former User of DNAx Community_6
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My csv file is not downloading fully, what might be the possible cause.
- Former User of DNAx Community_38
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How can I extract AD, AF, DP information from ##FORMAT lines of snpEff.vcf file?
- Permanently deleted user
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Why there are so many mutations with a high percentage of unknown data in chromosome 6?
- Former User of DNAx Community_61
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WDL workflow and bash/R outputs in DNAnexus?
- Permanently deleted user
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Recommendations for understanding WES pVCF file data in detail
- Former User of DNAx Community_78
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Is there any dataset with only clinvar pathogenic variants information only?
- Former User of DNAx Community_6
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Is it possible to run Snakemake pipelines on DNAnexus? I'm trying to use DROP () but having many issues running it, any previous code example on Snakemake that works on DNAnexus?
- Former User of DNAx Community_100
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Questions/Error: ukb-rap-pheno-basic.ipynb
- Former User of DNAx Community_69
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Error when merging WGS plink files.
- Former User of DNAx Community_58
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I am trying to access accelerometry data. I would like to know how to use these datasets and are there any tutorials available for the analysis ?
- Former User of DNAx Community_6
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Many sample-level WGS gVCFs lack mitochondrial variant calls in UKB
- Former User of DNAx Community_7
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I'm trying to look for reports of a specific disease in a range of datasets. I used the cohort browser and then ran a Jupyter notebook with PySpark to get the data. ICD-10, -9, etc. works,but "Non-cancer illness code, self-reported" gives a Py4JJava error
- Former User of DNAx Community_20
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Why does dx tools still have a Python2.7 dependency? Following the directions to install does not work because of this.
- Former User of DNAx Community_2
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Why is HAIL SampleQC script stalling in JupyterLab?
- Former User of DNAx Community_82
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Downloading updated NMR metabolomic data
- Former User of DNAx Community_44
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Taking too long to update UKB dataset
- Former User of DNAx Community_10
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I am trying to generate a diet score and having hard time. Can someone help me with the analysis.
- Former User of DNAx Community_6
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Dates corresponding to proteomic and metabolomic data.
- Former User of DNAx Community_44
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Running HAIL-based SampleQC Script in JupyterLab
- Former User of DNAx Community_82
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How to request an invoice for a bill?
- Former User of DNAx Community_10
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What is the threshold value for Variant Allele Fraction and Reads on the Mutectcaller app?
- Permanently deleted user
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Can I filter when convert from BAM to VCF using the Mutectcaller app?
- Permanently deleted user
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How to run Genome-wide survival association analysis in DNAnexus?
- Former User of DNAx Community_19
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ICD-10: L20 Atopic Dermatitis vs. Data Field 131720: Date L20 first reported
- Former User of DNAx Community_36
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I am trying to figure out how to subset the protein expression dataset to participants that were randomly selected. Is there a field that denotes whether or not a participant with proteomics data is randomly selected vs preselected by the consortium?
- Former User of DNAx Community_33
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Help avoiding memory issues with table exporter.
- Former User of DNAx Community_44
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Can we create our custom JupyterLab image and run it on DNANexus?
- Former User of DNAx Community_36
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How to best handle EID and sample name mapping for bulk WGS gVCFs?
- Former User of DNAx Community_7
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How to deal with qctool Error: sample file and genotype file sample IDs do not match!
- Former User of DNAx Community_10
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