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Is phased vcf files available for all WES samples? (450K)
- Former User of DNAx Community_44
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Hi! We were wondering if it is correct to see Manta calls (23350 field_id) for 44K individuals only. Is there a date for the release of Manta call 150K? Many Thanks!
- Former User of DNAx Community_30
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I'm seeing inconsistency between dx ls and dx ls *.gz and files missing from the latter are ignored by dx download *
- Former User of DNAx Community_29
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WDL "restarton" executionpolicy not being used
- Former User of DNAx Community_51
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Gather ideas for UKB-RAP User Group Meeting
- Chai Fungtammasan
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I would like to access phenotype data from within a WDL task using a python script. How do I localize the database file as an input to the task? I'm getting a wrong type error.
- Former User of DNAx Community_98
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Why, in my downloaded main data, does UDI 40001-0.0 contain a lot other that ICD10 codes?
- Former User of DNAx Community_99
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Why i do not see and cannot download the project files inside a custom applet?
- Former User of DNAx Community_3
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Webinar Feb 1: Multi-Modal Data Integration Roundtable: Efficiently Analyze UK Biobank?s Diverse Data Types
- Brenton Pyle
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How many wallets can each user have associated with the RAP? Is there a way to pay in advance certain amount of money towards storage/analysis in the RAP platform? How is this set up with institutions?
- Permanently deleted user
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Where can I save processed images from the UKB bulk data and later use them for training the network. Do we have any example for such task. Looking specifically in LIVER MRI IMAGES.
- Permanently deleted user
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Where can I find information about the newest WGS and WES released data? I've searched in the showcase for each variable in the notes section but it says that the data is restricted. Thanks Diana
- Permanently deleted user
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Rate card vs quote previewed in RAP
- Permanently deleted user
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Is there a way to change file permissions in a DNANexus project (i.e. a dx equivalent of chmod)? For example, I'd like to make it so a particular file cannot be deleted.
- Former User of DNAx Community_57
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When can we know the carriers of clonal haematopoiesis of indeterminate potential (CHIP)?
- Former User of DNAx Community_27
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I am hoping I can have a script to run SAIGE GWAS on Dx command line using bgen files. Best- Nihal
- Former User of DNAx Community_91
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Isn't it about time the JupyterLab instance got an overhaul?
- Former User of DNAx Community_50
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How to download selected genotyping data (CEL files)
- Former User of DNAx Community_11
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Hail JupyterLab EOF error
- Former User of DNAx Community_51
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Hi dear there Can you help me in extracting genotype data from imputed "bgen files" for certain variants using the 'bigsnpr" R package?
- Former User of DNAx Community_88
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How can I use returned dataset on UKB-RAP
- Chai Fungtammasan
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Do I have to install dx-toolkit in ttyd to interact with platform?
- Chai Fungtammasan
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Can I package the whole workflow into a Docker?
- Chai Fungtammasan
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Would downloading WES files to ttyd workstation violate of MTA?
- Chai Fungtammasan
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Can I use UKB-RAP with non-UKB data?
- Chai Fungtammasan
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If I am on Tier3, do I still have to pay to use RAP?
- Chai Fungtammasan
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