Search
-
Hello, I have a question regarding saige
- Former User of DNAx Community_6
-
Is there more detailed information about WGS and WES. For example, BGI WGS CRAM files, Whole genome CRAM files. What specific data are contained in these folders. Thanks!
- Former User of DNAx Community_59
-
In cohort browser plots for 2 chosen cohorts are overlapping in tiles - is there any way to force them side-by-side, as it was in the video tutorials?
- Former User of DNAx Community_40
-
Uploading many small files very slow: Hi all, I'm trying to extract zipped images and re-upload them to the platform. Although small (each slice is around 250kB), the upload times are prohibitively slow. What is your approach?
- Former User of DNAx Community_64
-
Selecting SNPs of Interest and Linking These (Selected SNPs) to Rest of Data
- Former User of DNAx Community_83
-
dxfuse: automatically mount /mnt/project on custom Docker images?
- Former User of DNAx Community_55
-
How does dxfuse work in MacOS?
- Permanently deleted user
-
How can I verify that a WDL workflow previously compiled with dxCompiler was compiled with the -streamFiles flag?
- Former User of DNAx Community_98
-
May I ask how I should find the specific genetic data I need in WGS and WES compressed data, since it is impossible to open and check, such as regarding Prostate cancer and Thyroid cancer, do I need to apply the tools . Whether there are relevant codes.
- Former User of DNAx Community_59
-
Query of the week #4: Working with JSON and jq to get more details about your cohort(s)
- Ondrej Klempir
-
Webinar Apr 13: Flexible Variant Annotation on the UK Biobank Research Analysis Platform
- Brenton Pyle
-
I'm wondering if it's possible to understand dates of recurrent diseases in Summary Diagnoses of UKB. For example, an individual was diagnosed with lung cancer in 2010. and again diagnosed with lung cancer (same ICD code) in 2017.
- Former User of DNAx Community_19
-
Hello, I am using RStudio workbench. I am doing a task that takes quite long time. I get an error message and my session ends even though I am in Rstudio. Is there anyway to extend active session in RStudio? Thanks.
- Former User of DNAx Community_71
-
gatk's GenotypeGVCFs always gives an error when analyzing full exon data of.g.vcf.gz form in UK biobank: The list of input alleles must contain < NON_REF> as an allele but that is not the case at position 68991;
- Former User of DNAx Community_66
-
I built a cohort including T1 structural brain images. However, the actual brain data is in the bulk folder... how can I select all the participants of my cohort in the bulk folder and download the actual data?
- Permanently deleted user
-
How to use --batch-tsv with swiss army knife?
- Former User of DNAx Community_23
-
-
How can I convert CRAM file to BAM file using Swiss Army Knife?
- Permanently deleted user
-
We are trying to unzip the MRI task and rest data using jupyterLab. The project directory is read only. home/dnanexus/<my_project>; Is there a way for us to have read write access to a permanent directory. We have a student account.
- Former User of DNAx Community_74
-
Where can I find the BWA Reference Genome Index file?
- Permanently deleted user
-
How can I store files that aren't automatically deleted upon expiration of my Jupyter Notebook session?
- Former User of DNAx Community_97
-
Is it possible to restart a single failed block within a scattered WDL task ?
- Former User of DNAx Community_48
-
BOLT-LMM v2.4.1 update (added support for new bgen files)
- Permanently deleted user
-
I am trying to analyze the copy number variation (CNV) files (field 22431). How can I map the entries to genes/patients?
- Permanently deleted user
-
Hi- I ran the GWAS analysis using SAIGE and I had a very nosiy QQ plot and Manhattan plot. I just realized that I have not run QC steps on the imputed data. Is there a good resource on the QC steps before SAIGE analyses? Best- Nihal
- Former User of DNAx Community_91
-
What's the difference between Exome sequences_Alternative exome processing and Exome sequences in the Bulk data? Is there any document where we can read about this?
- Permanently deleted user
-
-
-
-
Can you open a port on dxjupyterlab to allow for using the dask dashboard?
- Former User of DNAx Community_38
Featured posts
Didn't find what you were looking for?
New post