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Error Reading Public Datasets
- Former User of DNAx Community_6
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I am trying to access the files from MNT/PROJECT but not accessible
- Former User of DNAx Community_6
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How to upgrade a package in dna nexus?
- Former User of DNAx Community_6
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Jobs trying to retrieve cached results?
- Permanently deleted user
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Accessing project files from applet
- Permanently deleted user
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I would like to ask you a question. Is it possible to create an applet to use the tools I installed in my environment and load the applet to use it later for other analysis? if so May I know how to do it?
- Former User of DNAx Community_6
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Hello! A couple of questions:1) How do I go about getting approved for accessing the cram files (they are restricted), and 2) Are there other options for accessing raw reads (before variants are called) that are aligned to reference for position only?
- Former User of DNAx Community_75
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Is there a way to extract the bulk imaging data using the spark jupyter notebook.
- Permanently deleted user
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I have seen a public resource hosted in google cloud and would like to access that information in DNAnexus. Is it possible to access datasets that are in gs:// from DNAnexus?
- Former User of DNAx Community_6
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Hi all! We were wondering if the SVs called by Graphtyper as LargeSVsize (Filter column) are considered as PASS. Thanks!
- Former User of DNAx Community_87
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How do I call the table_exporter applet from my WDL?
- Former User of DNAx Community_98
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Importing functions from one Jupyter notebook (or Python script) to another within a DNAnexus JupyterLab session
- Former User of DNAx Community_41
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Is depth/coverage files available for all WES cram samples? (450K)
- Former User of DNAx Community_44
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Is phased vcf files available for all WES samples? (450K)
- Former User of DNAx Community_44
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Hi! We were wondering if it is correct to see Manta calls (23350 field_id) for 44K individuals only. Is there a date for the release of Manta call 150K? Many Thanks!
- Former User of DNAx Community_30
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I'm seeing inconsistency between dx ls and dx ls *.gz and files missing from the latter are ignored by dx download *
- Former User of DNAx Community_29
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WDL "restarton" executionpolicy not being used
- Former User of DNAx Community_51
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Gather ideas for UKB-RAP User Group Meeting
- Chai Fungtammasan
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I would like to access phenotype data from within a WDL task using a python script. How do I localize the database file as an input to the task? I'm getting a wrong type error.
- Former User of DNAx Community_98
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Why, in my downloaded main data, does UDI 40001-0.0 contain a lot other that ICD10 codes?
- Former User of DNAx Community_99
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Why i do not see and cannot download the project files inside a custom applet?
- Former User of DNAx Community_3
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Webinar Feb 1: Multi-Modal Data Integration Roundtable: Efficiently Analyze UK Biobank?s Diverse Data Types
- Brenton Pyle
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How many wallets can each user have associated with the RAP? Is there a way to pay in advance certain amount of money towards storage/analysis in the RAP platform? How is this set up with institutions?
- Permanently deleted user
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Where can I save processed images from the UKB bulk data and later use them for training the network. Do we have any example for such task. Looking specifically in LIVER MRI IMAGES.
- Permanently deleted user
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Where can I find information about the newest WGS and WES released data? I've searched in the showcase for each variable in the notes section but it says that the data is restricted. Thanks Diana
- Permanently deleted user
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Rate card vs quote previewed in RAP
- Permanently deleted user
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Is there a way to change file permissions in a DNANexus project (i.e. a dx equivalent of chmod)? For example, I'd like to make it so a particular file cannot be deleted.
- Former User of DNAx Community_57
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When can we know the carriers of clonal haematopoiesis of indeterminate potential (CHIP)?
- Former User of DNAx Community_27
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