• Using rsID to apply genomic filter on my RAP cohort

  • Former User of DNAx Community_87
  • 23 February 2023 00:00
  • 0 votes
  • 1 comment

• There are 5 collaborators under my project, does that mean our project has 40 x 5 = 200 pounds as the initial credit? How to set up the bill for RAP activities to be charged to the 200-pound project account, not my personal 40-pound account? Thank you!

  • Former User of DNAx Community_77
  • 23 February 2023 00:00
  • 0 votes
  • 4 comments

• SAK (bcftools) errors when streaming VCFs in batch jobs

  • Permanently deleted user
  • 23 February 2023 00:00
  • 0 votes
  • 4 comments

• BOLT-LMM download link broken

  • Former User of DNAx Community_27
  • 23 February 2023 00:00
  • 0 votes
  • 4 comments

• WDL: how to resume a failed workflow ? (caching)

  • Former User of DNAx Community_46
  • 22 February 2023 00:00
  • 0 votes
  • 3 comments

• How can I capture Hail errors on the RAP?

  • Former User of DNAx Community_7
  • 22 February 2023 00:00
  • 0 votes
  • 1 comment

• WDL: File("dx;//file-id") vs dx download

  • Former User of DNAx Community_46
  • 22 February 2023 00:00
  • 0 votes
  • 1 comment

• Is it possible to run the FreeSurfer longitudinal processing pipeline on the RAP for T1 brain images?

  • Former User of DNAx Community_49
  • 21 February 2023 00:00
  • 0 votes
  • 6 comments

• Potential issues with imputed data

  • Former User of DNAx Community_51
  • 20 February 2023 00:00
  • 0 votes
  • 7 comments

• Is there a way to download phase 1 release and phase 2 release genotype calls separately? Thanks!

  • Former User of DNAx Community_75
  • 19 February 2023 00:00
  • 0 votes
  • 9 comments

• Now I have obtained the eid numbers of patients. How can I get the exon sequencing of these specific patients?

  • Former User of DNAx Community_66
  • 18 February 2023 00:00
  • 0 votes
  • 4 comments

• Query of the Week #1: Export Phenotypic Data to a File

  • Ondrej Klempir
  • 17 February 2023 00:00
  • 2 votes
  • 39 comments

• Please, I am very new to the platform and still trying to understand a couple of things. How can I download demographic data and some biochemistry data for all participants from the RAP platform? the cohort browser only displays 30,000 items.

  • Former User of DNAx Community_84
  • 17 February 2023 00:00
  • 0 votes
  • 11 comments

• May I use the enhanced PRS (Data-Field 26200) in statistical models without calculating by myself?

  • Former User of DNAx Community_67
  • 16 February 2023 00:00
  • 0 votes
  • 3 comments

• Is the UKB going to provide the genotype array data and the imputed data in GRhC38 coordinates for general use in the platform? Given that the WES and WGS release are also in this coordinate system it would make sense. Thank you

  • Permanently deleted user
  • 16 February 2023 00:00
  • 0 votes
  • 1 comment

• WDL: what is the correct way to specify a docker/container ? ( The entity container-1234 could not be found )

  • Former User of DNAx Community_46
  • 16 February 2023 00:00
  • 0 votes
  • 10 comments

• Webinar Mar 9: End to End Target Discovery with GWAS and PheWAS

  • Brenton Pyle
  • 16 February 2023 00:00
  • 0 votes
  • 2 comments

• How to save the output from swiss army knife based analysis? I used the 'destination' part in the script but the outputs are not getting saved into the project. The codes were executed without an error and the log file shows the output files also.

  • Former User of DNAx Community_17
  • 15 February 2023 00:00
  • 0 votes
  • 3 comments

• I would like to know how is the pricing calculated? I've requested mem2_ssd1_v2_x32 and I can see that the spot/hr has a cost of 0.2112 GBP. However my job has been running for 21hr and I'm getting charged 19 GPB so far. The math does not make sense

  • Permanently deleted user
  • 14 February 2023 00:00
  • 0 votes
  • 4 comments

• WDL: how to specify a directory in the JSON input.

  • Former User of DNAx Community_46
  • 14 February 2023 00:00
  • 0 votes
  • 8 comments

• How to use tensorboard to visualise the training logs using the jupyter notebook for training a model.

  • Permanently deleted user
  • 10 February 2023 00:00
  • 0 votes
  • 6 comments

• Why are >2000 WGS pVCF chunks (200k release) apparently missing from the QC file 'qc_metrics_graphtyper_v2.7.1_qc.tab.gz'?

  • Former User of DNAx Community_53
  • 10 February 2023 00:00
  • 0 votes
  • 3 comments

• How to view contents (esp MatrixTables) in DNAX databases

  • Former User of DNAx Community_38
  • 09 February 2023 00:00
  • 0 votes
  • 1 comment

• WDL: specify directory as input.

  • Former User of DNAx Community_46
  • 09 February 2023 00:00
  • 0 votes
  • 4 comments

• Import Nextflow: Exiting with nonzero exit code to report error

  • Former User of DNAx Community_46
  • 09 February 2023 00:00
  • 0 votes
  • 2 comments

• DNA nexus and nextflow

  • Former User of DNAx Community_46
  • 08 February 2023 00:00
  • 0 votes
  • 8 comments

• dxfuse + bcftools " Input/output error" when reading.

  • Former User of DNAx Community_46
  • 08 February 2023 00:00
  • 0 votes
  • 4 comments

• WDL , docker and the "swiss army knife"

  • Former User of DNAx Community_46
  • 08 February 2023 00:00
  • 0 votes
  • 4 comments

• restart jobs that have SpotInstanceInterruption

  • Former User of DNAx Community_18
  • 07 February 2023 00:00
  • 0 votes
  • 1 comment

• Is there a codebook available for where data is located throughout the Research Analysis Platform?

  • Former User of DNAx Community_52
  • 06 February 2023 00:00
  • 0 votes
  • 6 comments

Featured posts

• Ongoing closure of the UKB-RAP
• Our new cost calculator helps you plan with confidence
• New resources for using code repositories with UK Biobank
• Useful links to DNAnexus UKB-RAP resources