Search
-
Are there alignment reports available?
- Permanently deleted user
-
Are the unplaced contigs of Hg38 included in the alignments?
- Permanently deleted user
-
Is there a way to mount Project/Bucket folders on VM workers directly, like NFS mount?
- Permanently deleted user
-
Failed to visualize data
- Former User of DNAx Community_61
-
Just wondering if there is dx commands that is equivalent to: find /path -name "*.bam" that can list all bam files with complete paths under /path directory. If not how about something like ls */*/*.bam? Thanks for help.
- Permanently deleted user
-
DXSearchERror encountered when running OpenBio notebook
- Former User of DNAx Community_7
-
Webinar Feb 24: Visualizing and Annotating GWAS Results on the UK Biobank Research Analysis Platform
- Brenton Pyle
-
Subsetting by genome
- Former User of DNAx Community_45
-
Hi, can you give me an idea how to proceed with this; I have an existing series of perl scripts (a few thousand lines), to perform variant calling from cram files. Is there anyway I can translate my current approach onto the Dnanexus system? Thanks
- Former User of DNAx Community_80
-
-
Hi! Question: How to retrieve all fields (from phenotypic data) for a specific sample or list of samples (provided a file for example)?
- Former User of DNAx Community_85
-
Hi folks! Ask me anything about UKBRAP or bioinformatics in general! Starting in 90 minutes!
- Ben Busby
-
I am trying to set up ssh settings so I can run a workstation. I am getting the following error when trying to run the command using CLI on a windows workstation. I have installed python version 3 and reinstalled dx CLI. Many thanks for your help!
- Former User of DNAx Community_45
-
-
Should there be a pruning step in the REGENIE step1 workflow?
- Former User of DNAx Community_28
-
-
For pVCF files, e.g. GraphTyper SVs is there a list of the genomic positions of the first and last variant in each batch file ?
- Former User of DNAx Community_64
-
Is there any way (e.g., using samtools/htsget) to access a slice of cram file (corresponding to a single genomic region) on RAP without downloading the whole cram file to a compute instance?
- Permanently deleted user
-
How can I create a list of all files available in a project in the RAP? Thanks!
- Former User of DNAx Community_93
-
-
-
-
What would be the cost of calculating a multilevel linear regression model with categorical exposure , continuous outcome, 15 covariates in the 500.000 particpant dataset including analytical weights and with missing values imputed by chained equations?
- Former User of DNAx Community_41
-
How can I estimate the resources that an AWS instance used after a run?
- Former User of DNAx Community_48
-
I would like to know whether the 300k Exome data is available as a single multi-sample VCF file or are they available as multiple per chromosome, per region VCF files ? (As 977 VCFs for 200k dataset)
- Former User of DNAx Community_60
-
What kind of data are you allowed to download? Are you allowed to download any individual-level genetic data? What about summary statistics?
- Former User of DNAx Community_17
-
"Are you able to suggest how long an ExWAS would take, such that I may estimate the cost?".
- Former User of DNAx Community_1
-
App Building cheatsheet now available
- Ted Laderas
-
I have dispensed an project but not all the data I am expecting is there
- Permanently deleted user
-
Featured posts
Didn't find what you were looking for?
New post