Search
-
I run vcftools for multiple files, but when I use swiss army knife and use *, I get an error as it sees my input as extra arguments, instead of running it once for each file. Is there any way to avoid merging all the vcf files into one?
- Former User of DNAx Community_43
-
How I can export a Jupyter lab notebook as pdf of HTML. I go to File > Export > HTML or PDF but I keep getting an error that the page is not there.
- Permanently deleted user
-
cram cache download/internet access from samtools
- Permanently deleted user
-
How to suppress job notification emails
- Former User of DNAx Community_61
-
Are there alignment reports available?
- Permanently deleted user
-
Are the unplaced contigs of Hg38 included in the alignments?
- Permanently deleted user
-
Is there a way to mount Project/Bucket folders on VM workers directly, like NFS mount?
- Permanently deleted user
-
Failed to visualize data
- Former User of DNAx Community_61
-
Just wondering if there is dx commands that is equivalent to: find /path -name "*.bam" that can list all bam files with complete paths under /path directory. If not how about something like ls */*/*.bam? Thanks for help.
- Permanently deleted user
-
DXSearchERror encountered when running OpenBio notebook
- Former User of DNAx Community_7
-
Webinar Feb 24: Visualizing and Annotating GWAS Results on the UK Biobank Research Analysis Platform
- Brenton Pyle
-
Subsetting by genome
- Former User of DNAx Community_45
-
Hi, can you give me an idea how to proceed with this; I have an existing series of perl scripts (a few thousand lines), to perform variant calling from cram files. Is there anyway I can translate my current approach onto the Dnanexus system? Thanks
- Former User of DNAx Community_80
-
-
Hi! Question: How to retrieve all fields (from phenotypic data) for a specific sample or list of samples (provided a file for example)?
- Former User of DNAx Community_85
-
Hi folks! Ask me anything about UKBRAP or bioinformatics in general! Starting in 90 minutes!
- Ben Busby
-
I am trying to set up ssh settings so I can run a workstation. I am getting the following error when trying to run the command using CLI on a windows workstation. I have installed python version 3 and reinstalled dx CLI. Many thanks for your help!
- Former User of DNAx Community_45
-
-
Should there be a pruning step in the REGENIE step1 workflow?
- Former User of DNAx Community_28
-
-
For pVCF files, e.g. GraphTyper SVs is there a list of the genomic positions of the first and last variant in each batch file ?
- Former User of DNAx Community_64
-
Is there any way (e.g., using samtools/htsget) to access a slice of cram file (corresponding to a single genomic region) on RAP without downloading the whole cram file to a compute instance?
- Permanently deleted user
-
How can I create a list of all files available in a project in the RAP? Thanks!
- Former User of DNAx Community_93
-
-
-
-
What would be the cost of calculating a multilevel linear regression model with categorical exposure , continuous outcome, 15 covariates in the 500.000 particpant dataset including analytical weights and with missing values imputed by chained equations?
- Former User of DNAx Community_41
-
How can I estimate the resources that an AWS instance used after a run?
- Former User of DNAx Community_48
-
I would like to know whether the 300k Exome data is available as a single multi-sample VCF file or are they available as multiple per chromosome, per region VCF files ? (As 977 VCFs for 200k dataset)
- Former User of DNAx Community_60
-
What kind of data are you allowed to download? Are you allowed to download any individual-level genetic data? What about summary statistics?
- Former User of DNAx Community_17
Featured posts
Didn't find what you were looking for?
New post