• Extract all phenotypic data within a category

  • Robin Mjelle
  • 14 March 2024 19:25
  • 1 vote
  • 1 comment

• reduced access fee

  • Junyi (Deb) Zhang
  • 12 March 2024 11:47
  • 1 vote
  • 2 comments

• How frequently are "low priority workstations" restarted

  • Fidel Alfaro Almagro
  • Edited 12 March 2024 10:26
  • 0 votes
  • 1 comment

• Parallel process multiple commands chromosome wise on swiss army knife

  • Priyatam Dutta
  • 07 March 2024 10:23
  • 0 votes
  • 1 comment

• Is it possible to dynamically input files in swiss-army-knife functions?

  • Hannah Louise Nicholls
  • Edited 06 March 2024 16:37
  • 0 votes
  • 3 comments

• WGS phasing

  • Andrew Anighoro
  • 04 March 2024 11:47
  • 0 votes
  • 4 comments

• WGS QC and list of variants

  • Andrew Anighoro
  • 04 March 2024 11:24
  • 0 votes
  • 1 comment

• VEP annotations

  • Andrew Anighoro
  • 29 February 2024 16:25
  • 1 vote
  • 5 comments

• Using WGS files with Hail

  • Andrew Anighoro
  • 29 February 2024 16:02
  • 0 votes
  • 12 comments

• How to resolve REGENIE errors with GEL and TOPmed BGEN indices

  • Mike
  • 28 February 2024 04:53
  • 2 votes
  • 1 comment

• Are there any RAP grants available to the student researchers with UKB access to run some analysis besides the introductory 40 pounds?

  • Sooyeon Lee
  • 28 February 2024 00:51
  • 0 votes
  • 1 comment

• Microsatellite sequences quality in UKBioBiank WGS

  • Marcin Wozniak
  • Edited 27 February 2024 07:21
  • 0 votes
  • 0 comments

• 500K WGS Batch Information

  • Yong Qian
  • 20 February 2024 14:48
  • 1 vote
  • 2 comments

• ANNOVAR in UKB-RAP

  • Lynette Sylvia Graver
  • 20 February 2024 09:57
  • 0 votes
  • 2 comments

• Number of sites removed by ukb23158_500k_OQFE.90pct10dp_qc_variants.txt

  • Bastien Rioux
  • 20 February 2024 09:36
  • 0 votes
  • 6 comments

• Male heterozygotes on X chromosome

  • Bastien Rioux
  • 20 February 2024 09:36
  • 0 votes
  • 2 comments

• Question regarding batches

  • Skh
  • 16 February 2024 10:13
  • 0 votes
  • 3 comments

• New Allele Frequency Browser launched!

  • Huma B
  • 18 January 2024 12:25
  • 0 votes
  • 0 comments

• Useful links to DNAnexus UKB-RAP resources Pinned Featured

  • David C
  • 17 January 2024 10:02
  • 1 vote
  • 0 comments

• How to use Plink in RAP

  • Former User of DNAx Community_28
  • 31 December 2023 00:00
  • 0 votes
  • 1 comment

• Hi Please, desperately I need help. I knew Data field 23370 relates to VCF files of whole genome sequencing data. I want to discover how many cases are available for malignant melanoma (WGS). I googled a lot but no clear tutorial I fund. Thanks

  • Former User of DNAx Community_7
  • 29 December 2023 00:00
  • 0 votes
  • 2 comments

• retrieve_fields function error

  • Former User of DNAx Community_19
  • 26 December 2023 00:00
  • 0 votes
  • 2 comments

• I wonder what is the correct date of UK biobank blood sample collection that were analyzed by WGS? The platform has multiple "Date of attending..." not sure which to use to align dates from ICD codes correctly to the date of sample that was sequenced

  • Former User of DNAx Community_23
  • 22 December 2023 00:00
  • 0 votes
  • 1 comment

• Is there a way to download WGS data? Could it be preprocessed on RAP then downloaded if direct download isn't possible?

  • Former User of DNAx Community_6
  • 20 December 2023 00:00
  • 0 votes
  • 1 comment

• How to properly write paths with the CLI and dx?

  • Former User of DNAx Community_18
  • 19 December 2023 00:00
  • 0 votes
  • 1 comment

• How to tell that a job has failed due to an out of memory error when it completes with state "done"

  • Former User of DNAx Community_47
  • 18 December 2023 00:00
  • 0 votes
  • 3 comments

• Are 500K WGS (GATK) and 200K WGS cram files the same for the same sample ids even though they have different fieldids? How much differences do we expect from the GATK crams and Dragen crams in the 500K WGS? Should we use DRAGEN cram?

  • Permanently deleted user
  • 18 December 2023 00:00
  • 0 votes
  • 4 comments

• Issue accessing hail-generated output

  • Former User of DNAx Community_6
  • 13 December 2023 00:00
  • 0 votes
  • 9 comments

• Proteomic Data (October 2023 Showcase Release) Now Available on UKB-RAP

  • Brenton Pyle
  • 12 December 2023 00:00
  • 0 votes
  • 7 comments

• I have joined just today I think I should use Cohort Browser to access and analyse any data type. But, I do not have any clue where is the Cohort Browser tab or link (page). I need to access to cancer WGS (or WES) let's say vcf or BAM (CRAM), any help?

  • Former User of DNAx Community_8
  • 11 December 2023 00:00
  • 0 votes
  • 11 comments

Featured posts

• Ongoing closure of the UKB-RAP
• Our new cost calculator helps you plan with confidence
• New resources for using code repositories with UK Biobank
• Useful links to DNAnexus UKB-RAP resources